diff --git a/core/plots.jl b/core/plots.jl index 5b531011ac0e9db3a07f0e32de05d75662a8be09..3f842e2aacc50c30afef6639ef90fb1774afcbf4 100644 --- a/core/plots.jl +++ b/core/plots.jl @@ -126,8 +126,6 @@ function plot_periodic_trajectory(A::LHA, σ::SynchronizedTrajectory, sym_obs::S scatter!(p, times(σ)[idx_n], σ[sym_obs][idx_n], annotations = annots, markershape = :utriangle, markersize = 3, label = "n") hline!(p, [A.constants[:L], A.constants[:H]], label = "L, H", color = :grey; linestyle = :dot) - @show values_n - @show values_tp if filename == "" display(p) else diff --git a/models/repressilator.jl b/models/repressilator.jl index 31e27c9c10a139bedad7123585830ce8cdd5247f..371c267d1f7a41ef614c7232958cf5e96e96e9f9 100644 --- a/models/repressilator.jl +++ b/models/repressilator.jl @@ -6,12 +6,12 @@ repressilator = @network_model begin trl1: (mRNA1 => mRNA1 + P1, β * mRNA1) trl2: (mRNA2 => mRNA2 + P2, β * mRNA2) trl3: (mRNA3 => mRNA3 + P3, β * mRNA3) - d1: (mRNA1 => 0, mRNA1) - d2: (mRNA2 => 0, mRNA2) - d3: (mRNA3 => 0, mRNA3) - d4: (P1 => 0, P1) - d5: (P2 => 0, P2) - d6: (P3 => 0, P3) + degr1: (mRNA1 => 0, mRNA1) + degr2: (mRNA2 => 0, mRNA2) + degr3: (mRNA3 => 0, mRNA3) + degr4: (P1 => 0, P1) + degr5: (P2 => 0, P2) + degr6: (P3 => 0, P3) end "Repressilator pkg" set_observed_var!(repressilator, [:mRNA1, :mRNA2, :mRNA3, :P1, :P2, :P3])