From 037809437e28df988d55928a77b53e800af23d79 Mon Sep 17 00:00:00 2001
From: Nihama Sandra Ayumi <sandra.nihama@student-cs.fr>
Date: Thu, 30 Jan 2020 09:46:15 +0100
Subject: [PATCH] comments in mutations
---
individu.py | 6 ++++++
1 file changed, 6 insertions(+)
diff --git a/individu.py b/individu.py
index 3a64ad9..c6b3ba2 100644
--- a/individu.py
+++ b/individu.py
@@ -57,6 +57,7 @@ class Individu():
def mutation(self, proba = P1):
+ # each dinucleotide has a probability "proba" to mutate
table_rotations = self.table.rot_table
for doublet in sorted(table_rotations.keys()) :
for coord in range(3):
@@ -71,6 +72,8 @@ class Individu():
table_rotations[doublet2][coord] = - table_rotations[doublet][coord]
def mutation_with_numbers(self, proba = P1, number_of_mutations = 1):
+ # each individual has a probability "proba" to be mutated
+ # if it mutates, then a number "number_of_mutations" of chromosomes will be randomly mutated
table_rotations = self.table.rot_table
table_rotation_not_seen = [i for i in sorted(table_rotations.keys())]
table_rotation_not_seen = table_rotation_not_seen[:8]
@@ -93,6 +96,9 @@ class Individu():
def mutation_close_values(self, proba = P1, number_of_mutations = 1):
+ # each individual has a probability "proba" to be mutated
+ # if it mutates, then a number "number_of_mutations" of chromosomes will be randomly mutated
+ # according to the normal distribution around the current value of the dinucleotide
table_rotations = self.table.rot_table
table_rotation_not_seen = [i for i in sorted(table_rotations.keys())]
table_rotation_not_seen = table_rotation_not_seen[:8]
--
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