diff --git a/individu.py b/individu.py index ae4d55652fe55994a4bd9578f00b52272e7fc6c3..57da3ffcd7d82d5adb5b8edafb47facd09c0aff0 100644 --- a/individu.py +++ b/individu.py @@ -31,6 +31,26 @@ class Individu(): self.score = 1/(distance + diff_angle) + __ORIGINAL_ROT_TABLE = {\ + "AA": [35.62, 7.2, -154, 0.06, 0.6, 0],\ + "AC": [34.4, 1.1, 143, 1.3, 5, 0],\ + "AG": [27.7, 8.4, 2, 1.5, 3, 0],\ + "AT": [31.5, 2.6, 0, 1.1, 2, 0],\ + "CA": [34.5, 3.5, -64, 0.9, 34, 0],\ + "CC": [33.67, 2.1, -57, 0.07, 2.1, 0],\ + "CG": [29.8, 6.7, 0, 1.1, 1.5, 0],\ + "CT": [27.7, 8.4, -2, 1.5, 3, 0],\ + "GA": [36.9, 5.3, 120, 0.9, 6, 0],\ + "GC": [40, 5, 180, 1.2, 1.275, 0],\ + "GG": [33.67, 2.1, 57, 0.07, 2.1, 0],\ + "GT": [34.4, 1.1, -143, 1.3, 5, 0],\ + "TA": [36, 0.9, 0, 1.1, 2, 0],\ + "TC": [36.9, 5.3, -120, 0.9, 6, 0],\ + "TG": [34.5, 3.5, 64, 0.9, 34, 0],\ + "TT": [35.62, 7.2, -154, 0.06, 0.6, 0]\ + } + + def mutation(self, proba = P1): table_rotations = self.table.rot_table for doublet in table_rotations : @@ -39,7 +59,7 @@ class Individu(): if tir < proba : print("mutation", doublet, coord) print("table", table_rotations[doublet][coord]) - table_rotations[doublet][coord] =np.random.uniform(low = self.table.__ORIGINAL_ROT_TABLE[doublet][coord] - self.table.__ORIGINAL_ROT_TABLE[doublet][coord + 3], high = self.table.__ORIGINAL_ROT_TABLE[doublet][coord] + self.table.__ORIGINAL_ROT_TABLE[doublet][coord + 3]) + table_rotations[doublet][coord] =np.random.uniform(low = Individu.__ORIGINAL_ROT_TABLE[doublet][coord] - Individu.__ORIGINAL_ROT_TABLE[doublet][coord + 3], high = Individu.__ORIGINAL_ROT_TABLE[doublet][coord] + Individu.__ORIGINAL_ROT_TABLE[doublet][coord + 3]) print("table", table_rotations[doublet][coord]) individu1 = Individu(RotTable())