From f77e72f7c0c6aa99a52494f9c1f9e6e7f38664a0 Mon Sep 17 00:00:00 2001
From: Kappes Marques Rodrigo <rodrigo.kappes@student-cs.fr>
Date: Thu, 30 Jan 2020 09:28:24 +0100
Subject: [PATCH] Cleaned RotTable
---
RotTable.py | 14 +++++++-------
1 file changed, 7 insertions(+), 7 deletions(-)
diff --git a/RotTable.py b/RotTable.py
index 9f841ef..cb1f75b 100644
--- a/RotTable.py
+++ b/RotTable.py
@@ -24,6 +24,7 @@ class RotTable:
"TT": [35.62, 7.2, 154, 0.06, 0.6, 0]\
}
+ #The table that indicates what dinucleotides have dependent angles
__CORRESPONDANCE = {\
"AA": "TT",\
"AC": "GT",\
@@ -55,6 +56,11 @@ class RotTable:
"GC": "GC",\
"TA": "TA"\
}
+
+ ###################
+ # WRITING METHODS #
+ ###################
+
# get the angles in each axis (x, y, z), considering the deviation
def __init__(self):
self.rot_table = {}
@@ -67,6 +73,7 @@ class RotTable:
def alea(self):
for dinucleotide in RotTable.__SOUS_CORRESPONDANCE:
for i in range(2):
+ #We use a unifor distribution along the desired values
delta = numpy.random.uniform(low = -RotTable.__ORIGINAL_ROT_TABLE[dinucleotide][i+3], high= RotTable.__ORIGINAL_ROT_TABLE[dinucleotide][i+3])
self.rot_table[dinucleotide][i] += delta
self.rot_table[RotTable.__SOUS_CORRESPONDANCE[dinucleotide]][i] += delta
@@ -78,9 +85,6 @@ class RotTable:
def corr(self):
return self.__CORRESPONDANCE
- ###################
- # WRITING METHODS #
- ###################
#table = RotTable()
#table.rot_table["AA"] --> [35.62, 7.2, -154]
@@ -99,7 +103,3 @@ class RotTable:
###################
-#table1 = RotTable()
-#print(table1.orta())
-
-# print(table1.rot_table)
--
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