import numpy from RotTable import RotTable from individu import Individu ROT_TABLE = {\ "AA": [35.62, 7.2, -154, 0.06, 0.6, 0],\ "AC": [34.4, 1.1, 143, 1.3, 5, 0],\ "AG": [27.7, 8.4, 2, 1.5, 3, 0],\ "AT": [31.5, 2.6, 0, 1.1, 2, 0],\ "CA": [34.5, 3.5, -64, 0.9, 34, 0],\ "CC": [33.67, 2.1, -57, 0.07, 2.1, 0],\ "CG": [29.8, 6.7, 0, 1.1, 1.5, 0],\ "CT": [27.7, 8.4, -2, 1.5, 3, 0],\ "GA": [36.9, 5.3, 120, 0.9, 6, 0],\ "GC": [40, 5, 180, 1.2, 1.275, 0],\ "GG": [33.67, 2.1, 57, 0.07, 2.1, 0],\ "GT": [34.4, 1.1, -143, 1.3, 5, 0],\ "TA": [36, 0.9, 0, 1.1, 2, 0],\ "TC": [36.9, 5.3, -120, 0.9, 6, 0],\ "TG": [34.5, 3.5, 64, 0.9, 34, 0],\ "TT": [35.62, 7.2, -154, 0.06, 0.6, 0]\ } def croisement_un_point(parent1, parent2): enfant1 = Individu(RotTable()) enfant2 = Individu(RotTable()) comp = 0 point_crois= numpy.random.random_integers(0,8) for doublet in ROT_TABLE: if doublet == "GA": break if comp < point_crois: enfant1.table.rot_table[doublet] = parent1.table.rot_table[doublet] correspondent_doublet1 = enfant1.table.corr()[doublet] enfant1.table.rot_table[correspondent_doublet1] = parent1.table.rot_table[correspondent_doublet1] enfant1.table.rot_table[correspondent_doublet1][2] *= -1 enfant2.table.rot_table[doublet] = parent2.table.rot_table[doublet] correspondent_doublet2 = enfant2.table.corr()[doublet] enfant2.table.rot_table[correspondent_doublet2] = parent2.table.rot_table[correspondent_doublet2] enfant2.table.rot_table[correspondent_doublet2][2] *= -1 else : enfant1.table.rot_table[doublet] = parent2.table.rot_table[doublet] correspondent_doublet1 = enfant1.table.corr()[doublet] enfant1.table.rot_table[correspondent_doublet1] = parent2.table.rot_table[correspondent_doublet1] enfant1.table.rot_table[correspondent_doublet1][2] *= -1 enfant2.table.rot_table[doublet] = parent1.table.rot_table[doublet] correspondent_doublet2 = enfant2.table.corr()[doublet] enfant2.table.rot_table[correspondent_doublet2] = parent1.table.rot_table[correspondent_doublet1] enfant2.table.rot_table[correspondent_doublet2][2] *= -1 comp += 1 return enfant1, enfant2 def croisement_deux_points(parent1, parent2): enfant1 = Individu(RotTable()) enfant2 = Individu(RotTable()) comp = 0 point_crois1= numpy.random.random_integers(0,8) point_crois2= numpy.random.random_integers(0,8) for doublet in ROT_TABLE: if comp < min(point_crois1,point_crois2) or comp > max(point_crois1,point_crois2): enfant1.table.rot_table[doublet] = parent1.table.rot_table[doublet] correspondent_doublet1 = enfant1.table.corr()[doublet] enfant1.table.rot_table[correspondent_doublet1] = parent1.table.rot_table[correspondent_doublet1] enfant1.table.rot_table[correspondent_doublet1][2] *= -1 enfant2.table.rot_table[doublet] = parent2.table.rot_table[doublet] correspondent_doublet2 = enfant2.table.corr()[doublet] enfant2.table.rot_table[correspondent_doublet2] = parent2.table.rot_table[correspondent_doublet2] enfant2.table.rot_table[correspondent_doublet2][2] *= -1 else : enfant1.table.rot_table[doublet] = parent2.table.rot_table[doublet] correspondent_doublet1 = enfant1.table.corr()[doublet] enfant1.table.rot_table[correspondent_doublet1] = parent2.table.rot_table[correspondent_doublet1] enfant1.table.rot_table[correspondent_doublet1][2] *= -1 enfant2.table.rot_table[doublet] = parent1.table.rot_table[doublet] correspondent_doublet2 = enfant2.table.corr()[doublet] enfant2.table.rot_table[correspondent_doublet2] = parent1.table.rot_table[correspondent_doublet1] enfant2.table.rot_table[correspondent_doublet2][2] *= -1 comp += 1 return enfant1, enfant2 # parent1 = Individu(RotTable()) # parent2 = Individu(RotTable()) # print("parent1: ", parent1.table.rot_table) # print("parent2: ", parent2.table.rot_table) # enfant1, enfant2 = croisement_un_point(parent1, parent2) # print("enfant1: ", enfant1.table.rot_table) # print("enfant2: ", enfant2.table.rot_table)