TCGA-A1-A0SB_db9d40fb-bfce-4c3b-a6c2-41c5c88982f1_a3254f8e-3bbd-42fc-abea-a5f25b7648b3.oxoG.snp.capture.tcga.txt 2.64 KB
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Chromosome	Position	dbSNP_RS	Tumor_Seq_Allele1	Tumor_Seq_Allele2	Variant_Quality	Filter_VCF	Hugo_Symbol	Variant_Classification	Variant_Type	Transcript_ID	n_GT	n_SS	n_FA	n_DP	n_AD	t_GT	t_SS	t_FA	t_DP	t_AD
1	44476442		C	T	43	PASS	SLC6A9	5'UTR	SNP	ENST00000372307.3	0/0	2	0.000	69	69,0	0/1	2	0.276	58	42,16
1	244583577		G	T	6	PASS	ADSS	Missense_Mutation	SNP	ENST00000366535.3	0/0	2	0.000	77	77,0	0/1	2	0.083	36	33,3
2	25678299		C	T	24	PASS	DTNB	Missense_Mutation	SNP	ENST00000406818.3	0/0	2	0.000	33	33,0	0/1	2	0.471	17	9,8
3	85932472		C	T	56	PASS	CADM2	Silent	SNP	ENST00000383699.3	0/0	2	0.000	50	50,0	0/1	2	0.514	37	18,19
6	7986778		G	A	27	PASS	BLOC1S5-TXNDC5	Intron	SNP	ENST00000539054.1	0/0	2	0.000	23	23,0	0/1	2	0.435	23	13,10
7	75609837		C	G	13	PASS	POR	Intron	SNP	ENST00000394893.1	0/0	2	0.000	8	8,0	0/1	2	0.455	11	6,5
7	149129243		G	A	16	PASS	ZNF777	Missense_Mutation	SNP	ENST00000247930.4	0/0	2	0.000	18	18,0	0/1	2	0.222	27	21,6
7	150840441		C	T	26	PASS	AGAP3	Missense_Mutation	SNP	ENST00000463381.1	0/0	2	0.000	28	28,0	0/1	2	0.375	24	15,9
10	116247760		T	C	26	PASS	ABLIM1	Missense_Mutation	SNP	ENST00000392952.3	0/0	2	0.000	72	72,0	0/1	2	0.244	45	34,11
12	43944926		T	C	44	PASS	ADAMTS20	Missense_Mutation	SNP	ENST00000389420.3	0/0	2	0.000	50	50,0	0/1	2	0.469	32	17,15
13	50464902		T	C	8	PASS		IGR	SNP		0/0	2	0.000	75	75,0	0/1	2	0.077	65	60,5
14	65266493		T	C	20	PASS	SPTB	Missense_Mutation	SNP	ENST00000556626.1	0/0	2	0.000	21	21,0	0/1	2	0.400	20	12,8
15	91043489		C	T	9	PASS	IQGAP1	3'UTR	SNP	ENST00000268182.5	0/0	2	0.000	18	18,0	0/1	2	0.500	6	3,3
16	88790292		T	C	20	PASS	PIEZO1	Missense_Mutation	SNP	ENST00000301015.9	0/0	2	0.000	34	34,0	0/1	2	0.280	25	18,7
17	40272381		G	A	99	PASS	KAT2A	Silent	SNP	ENST00000225916.5	0/0	2	0.000	35	35,0	0/1	2	0.525	61	29,32
19	42585066		G	A	17	PASS	ZNF574	Missense_Mutation	SNP	ENST00000600245.1	0/0	2	0.000	19	19,0	0/1	2	0.280	25	18,7
20	16730581		G	A	21	PASS	OTOR	Missense_Mutation	SNP	ENST00000246081.2	0/0	2	0.000	52	52,0	0/1	2	0.186	43	35,8
22	23040479		C	G	41	PASS	IGLV2-23	RNA	SNP	ENST00000390306.2	0/0	2	0.000	23	23,0	0/1	2	0.520	25	12,13
X	51076024	rs143435240	G	A	6	PASS	NUDT10	Silent	SNP	ENST00000376006.3	0/0	2	0.013	78	77,1	0/1	2	0.068	44	41,3
X	77160816		A	G	7	PASS	COX7B	3'UTR	SNP	ENST00000481445.1	0/0	2	0.000	51	51,0	0/1	2	0.130	23	20,3
X	77160852		T	A	7	PASS	COX7B	3'UTR	SNP	ENST00000481445.1	0/0	2	0.000	35	35,0	0/1	2	0.176	17	14,3
X	78216689		C	T	26	PASS	P2RY10	Silent	SNP	ENST00000171757.2	0/0	2	0.000	63	63,0	0/1	2	0.185	54	44,10
X	122757148		A	T	6	PASS	THOC2	Intron	SNP	ENST00000245838.8	0/0	2	0.000	48	48,0	0/1	2	0.231	13	10,3
X	152684244		T	G	6	PASS	ZFP92	Missense_Mutation	SNP	ENST00000338647.5	0/0	2	0.000	62	62,0	0/1	2	0.059	51	48,3