genome.wustl.edu.TCGA-A1-A0SD.snv.0e81f9c986154ce89e59240c3f09534f.txt 17.1 KB
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Chromosome	Position	dbSNP_RS	Tumor_Seq_Allele1	Tumor_Seq_Allele2	Variant_Quality	Filter_VCF	n_GT	n_SS	n_FA	n_DP	n_DP4	n_AD	n_depth	n_ref_count	n_alt_count	t_GT	t_SS	t_FA	t_DP	t_DP4	t_AD	t_depth	t_ref_count	t_alt_count
1	2520302		T	C			0/0		0	5			5.0	5.0	0.0	0/1	2	0.5556	9	2,2,3,2	4,5	9.0	4.0	5.0
1	8421092		C	T			0/0	0	0	6	6,0,0,0		6.0	6.0	0.0	0/1	2	0.636	11	3,0,7,1	3,7	11.0	3.0	7.0
1	16386416		G	A			0/0	0	0	8			8.0	8.0	0.0	0/1	2	0.6207	29	7,4,11,7	11,19	29.0	11.0	19.0
1	16464673		G	A			0/0		0	6			6.0	6.0	0.0	0/1	2	0.5714	7	1,2,1,3	3,12	7.0	3.0	12.0
1	16974869		G	C			0/0	0	0	4	4,0,0,0		4.0	4.0	0.0	0/1	2	0.353	17	7,3,5,1	11,6	17.0	11.0	6.0
1	26504108		A	T			0/0	0	0	219	60,158,1,0	216,1	219.0	216.0	1.0	0/1	2	0.23	183	40,101,9,33	141,42	183.0	141.0	42.0
1	39796854		T	C			0/0		0	19			19.0	19.0	0.0	0/1	2	0.375	8	5,0,3,0	11,4	8.0	11.0	4.0
1	55505732		A	G			0/0	0	0	4	2,2,0,0		4.0	4.0	0.0	0/1	2	0.714	14	0,4,2,8	4,10	14.0	4.0	10.0
1	93599238		G	T			0/0		0	47		47,0	47.0	47.0	0.0	0/1	2	0.1034	29	26,0,2,1	26,3	29.0	26.0	3.0
1	95293148		G	A			0/0	0	0	176	102,74,0,0	176,0	176.0	176.0	0.0	0/1	2	0.259	266	99,99,37,32	197,69	266.0	197.0	69.0
1	112305406		T	A			0/0			194		184,7	194.0	184.0	7.0	0/1	2		147		134,9	147.0	134.0	9.0
1	116268198		A	G			0/0			63		63,0	63.0	63.0	0.0	0/1	2		61		56,5	61.0	56.0	5.0
1	120296069		C	T			0/0	0		30	0,30,0,0		30.0	30.0	0.0	0/1	2	0.263	19	0,14,2,3	14,5	19.0	14.0	5.0
1	144994654		G	A			0/0	0	0.1111	168	83,65,13,7		168.0	148.0	20.0	0/1	2	0.159	347	148,143,27,30	291,55	347.0	291.0	55.0
1	144994861		C	T			1/1	1	0.9556	47	0,2,1,44		47.0	2.0	45.0	0/1	2	0.854	41	0,6,2,33	6,35	41.0	6.0	35.0
1	145273431		A	G			0/0	0	0.089	385	91,259,9,26		385.0	350.0	35.0	0/1	2	0.132	960	257,576,37,89	833,127	960.0	833.0	127.0
1	150230424		T	G			0/0			129		128,0	129.0	128.0	0.0	0/1	2		247		240,7	247.0	240.0	7.0
1	152777901		G	A			0/0			112		112,0	112.0	112.0	0.0	0/1	2		241		219,22	241.0	219.0	22.0
1	152777903		G	C			0/0			112		112,0	112.0	112.0	0.0	0/1	2		234		214,20	234.0	214.0	20.0
1	158054332		G	A			0/0	0	0	41	13,28,0,0	41,0	41.0	41.0	0.0	0/1	2	0.296	159	29,83,11,36	112,47	159.0	112.0	47.0
1	158943328		T	C			0/0		0	19			19.0	19.0	0.0	0/1	2	0.25	16	12,0,4,0	13,14	16.0	13.0	14.0
1	159019487		C	A			0/0	0	0	134	1,133,0,0	134,0	134.0	134.0	0.0	0/1	2	0.358	148	0,92,0,53	95,53	148.0	95.0	53.0
1	160210108		C	T			0/0	0	0	63	12,51,0,0	60,0	63.0	60.0	0.0	0/1	2	0.2	125	22,78,3,22	100,25	125.0	100.0	25.0
1	182544815		T	C			0/1	1	0.4091	24	1,12,0,11		24.0	13.0	11.0	1/1	3	1	16	0,0,1,15	0,16	16.0	0.0	16.0
1	204125468		A	T			0/0	0	0	37		24,0	37.0	24.0	0.0	0/1	2	0.1562	32	4,23,1,4	14,5	32.0	14.0	5.0
1	248085124		G	A			0/1	1	0.586	163	57,11,61,35		163.0	68.0	96.0	1/1	3	0.799	303	32,7,130,84	61,242	303.0	61.0	242.0
1	248814126		G	A			0/1	1	0.7873	235	7,46,35,148		235.0	53.0	183.0	1/1	3	0.859	276	8,32,51,197	39,237	276.0	39.0	237.0
2	1546414		T	C			0/0	0	0	90	4,86,0,0	90,0	90.0	90.0	0.0	0/1	2	0.25	64	3,45,2,14	48,16	64.0	48.0	16.0
2	10132119		T	A			0/0			104		103,1	104.0	103.0	1.0	0/1	2		123		116,6	123.0	116.0	6.0
2	27324340		G	A			0/0	0		44	20,22,1,1		44.0	42.0	2.0	0/1	2	0.244	78	33,26,6,13	59,19	78.0	59.0	19.0
2	27708021		G	A			0/0			206		203,3	206.0	203.0	3.0	0/1	2		243		236,7	243.0	236.0	7.0
2	61462928		G	A			0/0			96		95,0	96.0	95.0	0.0	0/1	2		131		126,5	131.0	126.0	5.0
2	75114839		A	G			0/0	0	0	4	4,0,0,0		4.0	4.0	0.0	0/1	2	0.556	9	4,0,5,0	4,5	9.0	4.0	5.0
2	85890293		T	C			0/0	0	0	4	4,0,0,0		4.0	4.0	0.0	0/1	2	0.75	8	2,0,4,2	2,6	8.0	2.0	6.0
2	118771566		C	A			0/1	1	0.6667	10	1,1,4,4		10.0	2.0	8.0	1/1	3	1	36	0,0,10,26	0,36	36.0	0.0	36.0
2	159170495		T	N,G			0/0		0	68			68.0	68.0	0.0	0/2	2	0.1087	46	0,41,0,5		46.0	41.0	5.0
2	170070247		T	G			0/0		0	149		150,0	149.0	150.0	0.0	0/1	2	0.1158	190	68,100,13,9	169,22	190.0	169.0	22.0
2	220479255		G	A			0/0	0	0.007	148	63,84,1,1	146,0	148.0	146.0	0.0	0/1	2	0.237	262	94,105,29,34	199,62	262.0	199.0	62.0
2	232121173		A	C			0/0			114		111,1	114.0	111.0	1.0	0/1	2		120		115,5	120.0	115.0	5.0
2	239073046		C	T			0/0	0		1	1,0,0,0		1.0	1.0	0.0	1/1	2	1	4	0,0,2,2	0,4	4.0	0.0	4.0
2	240982228		C	T			0/1	1	0.7977	414	67,18,145,184		414.0	85.0	329.0	1/1	3	0.855	669	54,23,261,325	86,572	669.0	86.0	572.0
3	10108898		A	G			0/0			120		120,0	120.0	120.0	0.0	0/1	2		133		127,6	133.0	127.0	6.0
3	15345924		G	A			0/0	0	0	5			5.0	5.0	0.0	0/1	2	0.6667	6	0,2,1,3	2,4	6.0	2.0	4.0
3	39145186		G	A			0/0	0	0	8	0,8,0,0		8.0	8.0	0.0	0/1	2	0.625	8	0,3,0,5	3,5	8.0	3.0	5.0
3	42687278		C	T			0/0	0		12	8,0,4,0		12.0	8.0	4.0	0/1	2	0.357	28	18,0,10,0	18,10	28.0	18.0	10.0
3	64084857		C	A			0/0			92		92,0	92.0	92.0	0.0	0/1	2		125		118,6	125.0	118.0	6.0
3	108229122		C	G			0/0	0	0	6	5,0,1,0		6.0	5.0	1.0	1/1	2	1	5	0,0,4,1	0,5	5.0	0.0	5.0
3	135820792		C	A			0/0		0	55		78,7	55.0	78.0	7.0	0/1	2	0.1316	38	24,9,3,2	45,33	38.0	45.0	33.0
3	146243308		G	A			0/0	0	0	50	45,5,0,1	49,0	50.0	49.0	0.0	0/1	2	0.378	45	25,3,13,4	28,17	45.0	28.0	17.0
3	188478225		C	T			0/0	0		23	0,23,0,0	22,0	23.0	22.0	0.0	0/1	2	0.25	16	0,11,0,4	12,4	16.0	12.0	4.0
3	193177124		T	C			0/0	0	0	6	2,4,0,0		6.0	6.0	0.0	0/1	2	0.667	6	0,2,0,4	2,4	6.0	2.0	4.0
4	952210		C	T			0/0	0		2	0,2,0,0	2,0	2.0	2.0	0.0	1/1	2	0.941	17	0,1,3,13	1,16	17.0	1.0	16.0
4	15067943		A	G			0/0	0	0	194	36,158,1,0	191,0	194.0	191.0	0.0	0/1	2	0.23	209	35,126,11,37	161,48	209.0	161.0	48.0
4	25032135		C	T			0/0		0	6			6.0	6.0	0.0	0/1	2	0.5	22	6,5,6,5	11,11	22.0	11.0	11.0
4	78677973		A	G			0/0	0	0	117	91,25,1,0	116,1	117.0	116.0	1.0	0/1	2	0.331	148	86,13,40,9	99,49	148.0	99.0	49.0
4	119609200		G	T			0/0			68		68,0	68.0	68.0	0.0	0/1	2		58		53,4	58.0	53.0	4.0
4	151821369		C	A			0/0	0	0	92	18,74,0,0	91,0	92.0	91.0	0.0	0/1	2	0.227	88	11,57,4,16	68,20	88.0	68.0	20.0
5	848578		G	A			0/0	0	0	18			18.0	18.0	0.0	0/1	2	0.4615	13	7,0,6,0		13.0	7.0	6.0
5	6312879		C	G			0/0		0	20			20.0	20.0	0.0	0/1	2	0.375	16	0,10,0,6	38,21	16.0	38.0	21.0
5	13810149		G	A			0/0	0	0	3			3.0	3.0	0.0	1/1	2	0.75	12	2,1,7,2	3,9	12.0	3.0	9.0
5	76349716		A	C			0/0	0		37	33,1,3,0	34,3	37.0	34.0	3.0	0/1	2	0.686	51	14,2,35,0	16,35	51.0	16.0	35.0
5	112364613		G	A			0/0	0	0	158	96,61,1,0	157,0	158.0	157.0	0.0	0/1	2	0.245	159	75,47,28,11	120,39	159.0	120.0	39.0
5	131320961		C	G			0/0		0	11			11.0	11.0	0.0	0/1	2	0.4286	14	8,0,6,0	13,13	14.0	13.0	13.0
6	31238992		G	C			0/0	0	0	5			5.0	5.0	0.0	0/1	2	0.5455	22	4,6,2,10	11,14	22.0	11.0	14.0
6	33415553		A	G			0/0	0	0	25	25,0,0,0	25,0	25.0	25.0	0.0	0/1	2	0.24	25	19,0,6,0	19,6	25.0	19.0	6.0
6	41712443		G	A			0/0	0	0	64	38,26,0,0	64,0	64.0	64.0	0.0	0/1	2	0.282	117	47,37,23,10	84,33	117.0	84.0	33.0
6	44114773		G	T			0/0	0	0	27	1,26,0,0	27,0	27.0	27.0	0.0	0/1	2	0.3	20	0,14,1,5	14,6	20.0	14.0	6.0
6	51612753		G	T			0/0			94		94,0	94.0	94.0	0.0	0/1	2		143		138,5	143.0	138.0	5.0
6	55623942		C	A			0/0	0		17	1,16,0,0	17,0	17.0	17.0	0.0	0/1	2	0.211	19	1,14,2,2	15,4	19.0	15.0	4.0
6	75864107		C	T			0/0	0	0	130	116,14,0,0	130,0	130.0	130.0	0.0	0/1	2	0.217	157	98,25,30,5	123,34	157.0	123.0	34.0
6	152763259		G	A			0/0	0		40	32,8,0,0	39,0	40.0	39.0	0.0	0/1	2	0.217	92	60,12,18,2	72,20	92.0	72.0	20.0
6	155109182		T	G			0/0			197		192,2	197.0	192.0	2.0	0/1	2		224		216,7	224.0	216.0	7.0
6	159653544		G	A			0/0	0	0	7	2,5,0,0		7.0	7.0	0.0	0/1	2	0.368	19	8,3,2,6	11,7	19.0	11.0	7.0
7	1976432		C	T			0/0	0	0	4	3,1,0,0		4.0	4.0	0.0	0/1	2	0.483	29	10,5,9,5	15,14	29.0	15.0	14.0
7	2691610		G	A			0/0	0	0	3	2,1,0,0		3.0	3.0	0.0	1/1	2	1	4	0,0,2,2	0,4	4.0	0.0	4.0
7	22200248		C	T			0/0		0	96		96,0	96.0	96.0	0.0	0/1	2	0.1062	113	33,68,2,10	101,13	113.0	101.0	13.0
7	43622806		T	C			0/0	0	0	4	2,2,0,0		4.0	4.0	0.0	0/1	2	0.667	9	1,2,2,4	3,6	9.0	3.0	6.0
7	44580876		G	T			0/0	0	0	7	4,2,1,0		7.0	6.0	1.0	0/1	2	0.727	11	1,2,3,5	3,8	11.0	3.0	8.0
7	45717850		T	G			0/0			274		272,1	274.0	272.0	1.0	0/1	2		392		382,10	392.0	382.0	10.0
7	47894517		G	T			0/0			112		112,0	112.0	112.0	0.0	0/1	2		98		94,4	98.0	94.0	4.0
7	96339155		C	A			0/0	0	0	44	10,34,0,0	43,0	44.0	43.0	0.0	0/1	2	0.246	65	5,44,2,14	49,16	65.0	49.0	16.0
7	105636709		G	A			0/0	0	0	27	25,2,0,0	27,0	27.0	27.0	0.0	0/1	2	0.25	40	20,10,9,1	30,10	40.0	30.0	10.0
7	122769396		G	C			0/0		0	88			88.0	88.0	0.0	0/1	2	0.1101	109	89,8,10,2		109.0	97.0	12.0
7	138391207		G	A			0/0	0	0	4	4,0,0,0		4.0	4.0	0.0	0/1	2	0.857	7	1,0,6,0	1,6	7.0	1.0	6.0
7	150915788		A	C			0/0			152		151,1	152.0	151.0	1.0	0/1	2		228		198,29	228.0	198.0	29.0
8	22974325		G	A			1/1	1	0.9296	90	8,4,46,32		90.0	12.0	78.0	0/1	2	0.782	165	23,10,73,54	36,129	165.0	36.0	129.0
8	30705004		G	A			0/0			232		232,0	232.0	232.0	0.0	0/1	2		283		276,7	283.0	276.0	7.0
8	67753176		C	T,A			0/0			56		56,0	56.0	56.0	0.0	0/2	2	0.082	70		64,5	70.0	64.0	5.0
8	121344960		G	A			0/0	0	0	183	30,153,0,0	182,0	183.0	182.0	0.0	0/1	2	0.393	280	21,149,17,93	170,110	280.0	170.0	110.0
8	143400081		C	T			0/0	0	0	11	0,11,0,0	11,0	11.0	11.0	0.0	0/1	2	0.224	49	2,36,1,10	38,11	49.0	38.0	11.0
8	144649690		C	T			0/0		0	4			4.0	4.0	0.0	1/1	2	0.8571	7	1,0,6,0	1,8	7.0	1.0	8.0
9	2718534		C	G			0/0	0	0	4	4,0,0,0	4,0	4.0	4.0	0.0	1/1	2	1	6	0,0,5,1	0,6	6.0	0.0	6.0
9	14737583		G	A			0/0	0	0	87		87,0	87.0	87.0	0.0	0/1	2	0.3108	76	9,42,4,19	52,24	76.0	52.0	24.0
9	18889789		G	A			0/0	0	0	8	2,5,0,1		8.0	7.0	1.0	0/1	2	0.684	19	3,3,3,10	6,13	19.0	6.0	13.0
9	34564705		C	T			0/0	0	0	55	13,41,0,1	54,0	55.0	54.0	0.0	0/1	2	0.147	143	38,84,9,13	121,21	143.0	121.0	21.0
9	68427793		G	T			0/0			287		283,1	287.0	283.0	1.0	0/1	2		392		379,13	392.0	379.0	13.0
9	115934061		A	N,C			0/0		0	59			59.0	59.0	0.0	0/2	2	0.1053	57	0,51,0,6		57.0	51.0	6.0
10	24498096		G	T			0/0			93		93,0	93.0	93.0	0.0	0/1	2		87		83,4	87.0	83.0	4.0
10	46961964		G	A			0/0	0	0.05	20		9,0	20.0	9.0	0.0	0/1	2	0.2836	67	43,5,15,4	19,10	67.0	19.0	10.0
10	61834851		G	C			0/0	0	0	217	155,62,0,0	217,0	217.0	217.0	0.0	0/1	2	0.45	378	141,66,104,68	207,170	378.0	207.0	170.0
10	89692904		C	T			0/0			195		193,0	195.0	193.0	0.0	0/1	2		249		233,16	249.0	233.0	16.0
10	96448129		A	G			0/1	1	0.5	4	0,2,0,2		4.0	2.0	2.0	1/1	3	1	16	0,0,1,15	0,16	16.0	0.0	16.0
10	118387282		A	G			0/0	0	0	5	2,3,0,0	5,0	5.0	5.0	0.0	1/1	2	0.895	19	0,2,9,8	2,17	19.0	2.0	17.0
10	123310734		A	C			0/0	0	0	41	30,10,1,0	40,0	41.0	40.0	0.0	0/1	2	0.389	54	26,6,16,5	32,21	54.0	32.0	21.0
11	1958016		C	T			0/0	0	0	3			3.0	3.0	0.0	0/1	2	0.7	10	2,1,6,1	3,7	10.0	3.0	7.0
11	4945468		G	T			0/0			99		98,0	99.0	98.0	0.0	0/1	2		78		74,4	78.0	74.0	4.0
11	48453787		G	A			1/1	1	0.812	121	20,2,91,8		121.0	22.0	99.0	0/1	2	0.708	130	27,2,81,13	38,92	130.0	38.0	92.0
11	58381738		T	A			0/0	0	0	146	79,67,0,0	145,0	146.0	145.0	0.0	0/1	2	0.354	127	49,33,25,20	82,45	127.0	82.0	45.0
11	63523458		T	G			0/0		0.0125	80			80.0	80.0	0.0	0/1	2	0.1111	36	32,0,4,0		36.0	32.0	4.0
11	65655337		G	T			0/0		0	47		47,0	47.0	47.0	0.0	0/1	2	0.0909	46	23,17,2,2	42,4	46.0	42.0	4.0
11	68331663		G	A			0/0	0	0	6	6,0,0,0		6.0	6.0	0.0	0/1	2	0.5	10	5,0,4,1	5,5	10.0	5.0	5.0
11	69466115		C	A			0/0		0	3			3.0	3.0	0.0	1/1	2	0.8333	6	0,1,0,5	1,5	6.0	1.0	5.0
11	108119638		T	G			0/0		0	37			37.0	37.0	0.0	0/1	2	0.1905	21	17,0,4,0		21.0	17.0	4.0
11	117063930		A	G			0/0	0	0	131	72,58,0,1	129,0	131.0	129.0	0.0	0/1	2	0.307	179	55,71,27,29	124,55	179.0	124.0	55.0
11	124972208		A	G			0/0	0	0	5	0,5,0,0	5,0	5.0	5.0	0.0	0/1	2	0.909	11	0,1,0,10	1,10	11.0	1.0	10.0
12	11461706		G	T			0/0	0	0.15	273	140,87,16,31		273.0	227.0	47.0	0/1	2	0.263	483	224,121,54,75	356,127	483.0	356.0	127.0
12	39155920		T	C			0/0			165		165,0	165.0	165.0	0.0	0/1	2		234		225,9	234.0	225.0	9.0
12	53581370		T	C			0/0	0	0	80	33,47,0,0	78,0	80.0	78.0	0.0	0/1	2	0.265	162	40,79,16,27	119,43	162.0	119.0	43.0
12	69979115		G	C			0/0	0	0	4	4,0,0,0		4.0	4.0	0.0	0/1	2	0.429	14	8,0,6,0	8,6	14.0	8.0	6.0
12	101490434		C	T			0/0	0	0	133	50,83,0,1	132,0	133.0	132.0	0.0	0/1	2	0.239	188	58,87,12,33	143,45	188.0	143.0	45.0
12	104181420		A	T			0/0	0	0	6	0,6,0,0		6.0	6.0	0.0	0/1	2	0.5	12	0,6,0,6	6,6	12.0	6.0	6.0
12	112622620		C	T			0/0	0	0.0172	61	15,45,0,2	59,0	61.0	59.0	0.0	0/1	2	0.22	168	29,102,10,27	131,37	168.0	131.0	37.0
12	119554750		C	A			0/0			183		183,0	183.0	183.0	0.0	0/1	2		251		235,16	251.0	235.0	16.0
12	126136863		C	T			0/0	0	0	7	7,0,0,0		7.0	7.0	0.0	0/1	2	0.462	13	7,0,6,0	7,6	13.0	7.0	6.0
13	52684815		C	T			0/0	0		92	0,82,0,10		92.0	82.0	10.0	0/1	2	0.208	48	0,38,0,10	38,10	48.0	38.0	10.0
13	52684817		C	T			1/1	1		91	0,10,0,81		91.0	10.0	81.0	0/1	2	0.826	46	0,8,0,38	8,38	46.0	8.0	38.0
13	95673941		A	G			0/0			125		122,3	125.0	122.0	3.0	0/1	2		91		83,7	91.0	83.0	7.0
13	111164102		T	C			0/0	0		1	1,0,0,0		1.0	1.0	0.0	1/1	2	1	4	0,0,2,2	0,4	4.0	0.0	4.0
14	57101581		T	G			0/0			125		116,9	125.0	116.0	9.0	0/1	2		102		65,34	102.0	65.0	34.0
14	104431642		A	T			0/0	0	0	49	41,8,0,0	49,0	49.0	49.0	0.0	0/1	2	0.293	41	24,5,9,3	29,12	41.0	29.0	12.0
15	23685920		A	C			0/0	0		30	26,4,0,0	30,0	30.0	30.0	0.0	0/1	2	0.206	32	19,9,2,5	26,5	32.0	26.0	5.0
15	23685922		C	T			0/0	0		31	27,4,0,0	31,0	31.0	31.0	0.0	0/1	2	0.25	34	19,9,4,5	26,7	34.0	26.0	7.0
15	45028919		C	T			0/0			155		154,0	155.0	154.0	0.0	0/1	2		231		219,10	231.0	219.0	10.0
15	53907842		A	T			0/0	0	0	106	47,59,0,0	106,0	106.0	106.0	0.0	0/1	2	0.26	77	24,33,11,9	57,20	77.0	57.0	20.0
15	64415581		G	T			0/0			124		124,0	124.0	124.0	0.0	0/1	2		138		133,5	138.0	133.0	5.0
15	79749365		G	A			0/0			107		107,0	107.0	107.0	0.0	0/1	2		155		149,6	155.0	149.0	6.0
16	626346		A	C			0/0	0	0	5	1,4,0,0		5.0	5.0	0.0	0/1	2	0.417	12	0,7,0,5	7,5	12.0	7.0	5.0
16	668443		A	G			0/0	0	0	8	0,8,0,0		8.0	8.0	0.0	0/1	2	0.8	5	0,1,0,4	1,4	5.0	1.0	4.0
16	2153508		C	T			0/0	0	0	5	4,1,0,0		5.0	5.0	0.0	0/1	2	0.478	23	12,0,11,0	12,11	23.0	12.0	11.0
16	33020809		G	A			0/0			147		143,3	147.0	143.0	3.0	0/1	2		243		232,11	243.0	232.0	11.0
17	1382576		G	C			0/0	0	0	4	4,0,0,0		4.0	4.0	0.0	0/1	2	0.625	8	3,0,5,0	3,5	8.0	3.0	5.0
17	7803016		T	G			0/0		0	22			22.0	22.0	0.0	0/1	2	0.2222	18	14,0,4,0		18.0	14.0	4.0
17	33884688		G	A			0/0	0	0	71	30,41,0,0	71,0	71.0	71.0	0.0	0/1	2	0.274	62	16,29,8,9	45,17	62.0	45.0	17.0
17	40489339		A	C			0/0		0	14		15,0	14.0	15.0	0.0	0/1	2	0.3571	14	9,0,5,0	10,7	14.0	10.0	7.0
17	40500265		C	A			0/0	0	0	4	3,1,0,0		4.0	4.0	0.0	0/1	2	0.6	10	4,0,6,0	4,6	10.0	4.0	6.0
17	40737071		A	G			0/0	0	0	41	38,3,0,0	41,0	41.0	41.0	0.0	0/1	2	0.224	58	38,7,12,1	45,13	58.0	45.0	13.0
17	45456770		T	G			0/0	0	0	31	0,31,0,0	31,0	31.0	31.0	0.0	0/1	2	0.211	19	0,15,0,4	15,4	19.0	15.0	4.0
17	48447481		G	T			0/0			70		70,0	70.0	70.0	0.0	0/1	2		78		74,4	78.0	74.0	4.0
17	56833491		T	C			0/0	0		13	2,10,1,0		13.0	12.0	1.0	0/1	2	0.244	45	13,21,5,6	34,11	45.0	34.0	11.0
17	72838649		C	A			0/0	0	0	7	2,5,0,0		7.0	7.0	0.0	0/1	2	0.556	18	4,4,6,4	8,10	18.0	8.0	10.0
18	51889346		C	A			0/0			47		47,0	47.0	47.0	0.0	0/1	2		49		45,4	49.0	45.0	4.0
19	547491		C	T			0/0	0	0	8	2,6,0,0	8,0	8.0	8.0	0.0	0/1	2	0.833	6	0,1,0,5	1,5	6.0	1.0	5.0
19	4511350		T	A			1/1	1	0.8796	140	8,8,71,53		140.0	16.0	124.0	0/1	2	0.815	151	13,19,78,54	28,123	151.0	28.0	123.0
19	6836885		A	G			0/0		0	10			10.0	10.0	0.0	0/1	2	0.5	4	2,0,2,0	6,26	4.0	6.0	26.0
19	10226187		G	A			0/0	0	0.0147	72	26,45,2,0	70,1	72.0	70.0	1.0	0/1	2	0.326	95	20,44,13,18	64,31	95.0	64.0	31.0
19	15223466		A	G			0/0	0	0	5	0,5,0,0		5.0	5.0	0.0	0/1	2	0.778	9	0,2,0,7	2,7	9.0	2.0	7.0
19	17008578		G	C			0/0	0	0	12		12,1	12.0	12.0	1.0	0/1	2	0.375	80	19,31,16,14	52,33	80.0	52.0	33.0
19	30312915		C	T			0/0			245		245,0	245.0	245.0	0.0	0/1	2		317		310,7	317.0	310.0	7.0
19	39227128		G	T			0/0	0	0	20	16,3,1,0		20.0	19.0	1.0	0/1	2	0.314	35	19,7,5,6	23,11	35.0	23.0	11.0
19	41355849		A	G			0/0		0	67		64,1	67.0	64.0	1.0	0/1	2	0.1046	181	100,114,8,17	158,22	181.0	158.0	22.0
19	41399887		A	G			0/0	0	0	3			3.0	3.0	0.0	0/1	2	0.7273	11	1,2,1,7	3,9	11.0	3.0	9.0
19	48640625		A	C			0/0	0	0	4	1,3,0,0		4.0	4.0	0.0	0/1	2	0.538	13	5,1,5,2	6,7	13.0	6.0	7.0
19	51329938		C	T			0/0	0	0	88	25,63,0,0	85,0	88.0	85.0	0.0	0/1	2	0.227	154	38,82,10,25	119,35	154.0	119.0	35.0
19	51412500		G	C			0/0	0	0	25	24,1,0,0	25,0	25.0	25.0	0.0	0/1	2	0.159	69	41,17,7,4	58,11	69.0	58.0	11.0
19	54216794		G	T			0/0	0		113	4,97,0,12		113.0	101.0	12.0	0/1	2	0.23	74	2,55,2,15	57,17	74.0	57.0	17.0
19	55672470		T	C			0/0	0	0	4	4,0,0,0		4.0	4.0	0.0	0/1	2	0.727	11	1,2,4,4	3,8	11.0	3.0	8.0
19	58011447		C	T			0/0	0	0	7	3,3,0,1		7.0	6.0	1.0	0/1	2	0.344	32	4,17,6,5	21,11	32.0	21.0	11.0
19	58773290		G	C			0/0	0	0	106	51,55,0,0	106,0	106.0	106.0	0.0	0/1	2	0.233	163	58,67,18,22	125,38	163.0	125.0	38.0
20	260005		T	C			0/0	0	0	6	0,6,0,0		6.0	6.0	0.0	0/1	2	0.579	19	0,8,0,11	8,11	19.0	8.0	11.0
20	23420938		C	T			0/0		0	85		88,0	85.0	88.0	0.0	0/1	2	0.113	177	95,62,11,9	160,21	177.0	160.0	21.0
20	25755889		A	T			0/0	0	0	46	18,28,0,0	42,0	46.0	42.0	0.0	0/1	2	0.431	123	31,36,22,31	70,53	123.0	70.0	53.0
20	26061750		T	A			0/0			32		32,0	32.0	32.0	0.0	0/1	2		50		45,5	50.0	45.0	5.0
20	34022387		A	C			0/0	0	0	5			5.0	5.0	0.0	0/1	2	0.5897	39	7,9,11,12	16,24	39.0	16.0	24.0
22	18300594		G	A			0/1	1	0.4286	7	2,2,1,2		7.0	4.0	3.0	1/1	3	1	16	0,0,6,10	0,16	16.0	0.0	16.0
22	23089759		A	T			0/0	0		1	0,1,0,0		1.0	1.0	0.0	1/1	2	1	4	0,0,2,2	0,4	4.0	0.0	4.0
X	1712722		A	C			0/0		0	20			20.0	20.0	0.0	0/1	2	0.2273	44	21,13,1,9		44.0	34.0	10.0
X	5810784		C	T			0/0	0	0.125	124	104,2,18,0		124.0	106.0	18.0	0/1	2	0.202	104	53,0,21,0	53,21	104.0	53.0	21.0
X	23956735		G	A			0/0	0	0	153	72,80,1,0	152,0	153.0	152.0	0.0	0/1	2	0.202	119	50,46,12,12	95,24	119.0	95.0	24.0
X	41379771		T	C			0/0	0	0	166	79,87,1,0	163,0	166.0	163.0	0.0	0/1	2	0.321	187	64,63,31,29	127,60	187.0	127.0	60.0
X	150868861		C	T			0/0	0	0	6	5,1,0,0		6.0	6.0	0.0	0/1	2	0.8	5	1,0,4,0	1,4	5.0	1.0	4.0
X	153132281		C	T			0/0	0	0	61	24,37,0,0	61,0	61.0	61.0	0.0	0/1	2	0.241	54	6,35,2,11	41,13	54.0	41.0	13.0
X	153595171		C	T			0/0			129		127,0	129.0	127.0	0.0	0/1	2		202		194,8	202.0	194.0	8.0