You may replace `/usr/local/bin` with whatever path where you usually save binaries. Finish the installation of vcf2maf following the instructions given in the [github](https://github.com/mskcc/vcf2maf).
#### 2.3
### 2.3 Example
The main function for annotating a vcf is `run_annotator` in `main` module. Have a look at `run_example_tcga_GA.py` to have an example of how to run the tool and at the `run_annotator` documentation for more details about the options.
