Commit e1801ca7 authored by Pradat Yoann's avatar Pradat Yoann
Browse files

[variant_annotator] update __init__ to export config classes

parent e0ea1359
......@@ -27,9 +27,7 @@ import sys
if "." not in sys.path:
sys.path.append(".")
from vari import run_annotator
from src.main import Vcf2mafConfig
from src.main import VepConfig
from variant_annotator import run_annotator, Vcf2mafConfig, VepConfig
#### # SCRIPT PARAMETERS
#### #####################################################################################################
......
......@@ -27,7 +27,7 @@ import sys
if "." not in sys.path:
sys.path.append(".")
from src.main import run_annotator
from variant_annotator import run_annotator, Vcf2mafConfig, VepConfig
#### # SCRIPT PARAMETERS
#### #####################################################################################################
......
......@@ -3,13 +3,15 @@ The :mod:`variant_annotator` module defines functions for annotating variants us
vcf2maf annotations.
"""
from ._main import run_annotator
from ._main import run_annotator, Vcf2mafConfig, VepConfig
from ._manual import run_manual_annotator
from ._vcf2maf import run_vcf2maf_annotator
from ._vep import run_vep_annotator
__all__ = [
'run_annotator',
'Vcf2mafConfig',
'VepConfig',
'run_manual_annotator',
'run_vcf2maf_annotator',
'run_vep_annotator'
......
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