Commits · master · MICS_Biomathematics / bioinfo / VariantAnnotator

17 Feb, 2021 1 commit
- v1.1 change setup.py and update ensembl-vep · 8dc9bb3d
  Pradat Yoann authored Feb 17, 2021
  
  8dc9bb3d
14 Feb, 2021 10 commits
- rm coverage.xml · 4f4c4bae
  Pradat Yoann authored Feb 14, 2021
  
  4f4c4bae
- rm coverage.xml · 1116ba55
  Pradat Yoann authored Feb 14, 2021
  
  1116ba55
- rm results_old · 8a377357
  Pradat Yoann authored Feb 14, 2021
  
  8a377357
- remove gitlab ci; add badges · c7717d8c
  Pradat Yoann authored Feb 14, 2021
  
  c7717d8c
- add os.makedirs out folder in test_main · b4784d84
  Pradat Yoann authored Feb 14, 2021
  
  b4784d84
- Add LICENSE · 486da0b9
  Pradat Yoann authored Feb 14, 2021
  
  486da0b9
- Delete LICENSE · e7252970
  Pradat Yoann authored Feb 14, 2021
  
  e7252970
- add submodule init in Makefile · 841acd4c
  Pradat Yoann authored Feb 14, 2021
  
  841acd4c
- add gitlab-ci · a8f628bf
  Pradat Yoann authored Feb 14, 2021
  
  a8f628bf
- update ensembl-vep to release 102 and Makefile · 9a55f932
  Pradat Yoann authored Feb 14, 2021
  
  9a55f932
02 Nov, 2020 2 commits
- rm .travis.yml · 9e5f8892
  Pradat Yoann authored Nov 02, 2020
  
  9e5f8892
- fix path to tools · d53f7a09
  Pradat Yoann authored Nov 02, 2020
  
  d53f7a09
30 Oct, 2020 9 commits
- make tumor_id and normal_id optional · 90638a8a
  Pradat Yoann authored Oct 31, 2020
  
  90638a8a
- [variant_annotator] update __init__ to export config classes · e1801ca7
  Pradat Yoann authored Oct 30, 2020
  
  e1801ca7
- [.gitignore] update . · e0ea1359
  Pradat Yoann authored Oct 30, 2020
  
  e0ea1359
- remove results; fix travis.yml again · 0de91fe5
  Pradat Yoann authored Oct 30, 2020
  
  0de91fe5
- fix travis.yml · 61c52473
  Pradat Yoann authored Oct 30, 2020
  
  61c52473
- add .travis.yml · a7651044
  Pradat Yoann authored Oct 30, 2020
  
  a7651044
- reorganize repo to have python package 'variant_annotator' · 88c7bddd
  Pradat Yoann authored Oct 30, 2020
  
  88c7bddd
- [src] update repo name · 4e64984d
  Pradat Yoann authored Oct 30, 2020
  
  4e64984d
- [README] format and remote git url · 51306200
  Pradat Yoann authored Oct 30, 2020
  
  51306200
02 Sep, 2020 6 commits
- update run_example_tcga_HS · 823a9d8c
  Pradat Yoann authored Sep 02, 2020
  
  823a9d8c
- update README · 39fb9c11
  Pradat Yoann authored Sep 02, 2020
  
  39fb9c11
- small fix env.yml · 038fa023
  Pradat Yoann authored Sep 02, 2020
  
  038fa023
- manually edit env.yml · 5c04363c
  Pradat Yoann authored Sep 02, 2020
  
  5c04363c
- set vcf2maf and ensembl-vep as submodules · 4f734f19
  Pradat Yoann authored Sep 02, 2020
  
  4f734f19
- add ensembl-vep and vcf2maf submodules · 1be993bf
  Pradat Yoann authored Sep 02, 2020
  
  1be993bf
28 Aug, 2020 4 commits
- minor fix remove redundant cols · a08e9e4e
  Pradat Yoann authored Aug 28, 2020
  
  a08e9e4e
- version v1.0 · 133cab8e
  Pradat Yoann authored Aug 28, 2020
  
  133cab8e
- add VepConfig and Vcf2mafConfig classes · 6310ccc3
  Pradat Yoann authored Aug 28, 2020
  
  6310ccc3
- add --cache to VEP and vep_n_fork argument to run_annotator; examples ran succesfully · e734d1b2
  Pradat Yoann authored Aug 28, 2020
  
  e734d1b2
26 Aug, 2020 2 commits
- add vcf2maf_overwrite option · d5d0c44d
  Pradat Yoann authored Aug 26, 2020
  
  d5d0c44d
- add Transcript_ID feature · 07aba00c
  Pradat Yoann authored Aug 26, 2020
  
  07aba00c
14 Aug, 2020 5 commits
- [dev] minor fixes · 37d89f1f
  Pradat Yoann authored Aug 14, 2020
  
  37d89f1f
- clean main · 5a5941bb
  Pradat Yoann authored Aug 14, 2020
  
  5a5941bb
- fix README · 97a45912
  Pradat Yoann authored Aug 14, 2020
  
  97a45912
- update README with ref · cdea3837
  Pradat Yoann authored Aug 14, 2020
  
  cdea3837
- [dev] successful run example and tag v.0.99 · 77942e1a
  Pradat Yoann authored Aug 14, 2020
  
  77942e1a
13 Aug, 2020 1 commit
- rm __pycache__ · e8ab514f
  Pradat Yoann authored Aug 13, 2020
  
  e8ab514f