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Bentriou Mahmoud authored
implemetend in the package. A lot of files has been modified because some of the internal syntax has changed. But the top level methods should still work. Two tests about the plots of synchronized oscillatory simulations have been added. All tests passed.
Bentriou Mahmoud authoredimplemetend in the package. A lot of files has been modified because some of the internal syntax has changed. But the top level methods should still work. Two tests about the plots of synchronized oscillatory simulations have been added. All tests passed.
repressilator.jl 836 B
repressilator = @network_model begin
tr1: (G1 => G1 + mRNA1, α/(1+P3^n) + α0)
tr2: (G2 => G2 + mRNA2, α/(1+P1^n) + α0)
tr3: (G3 => G3 + mRNA3, α/(1+P2^n) + α0)
trl1: (mRNA1 => mRNA1 + P1, β * mRNA1)
trl2: (mRNA2 => mRNA2 + P2, β * mRNA2)
trl3: (mRNA3 => mRNA3 + P3, β * mRNA3)
degr1: (mRNA1 => 0, mRNA1)
degr2: (mRNA2 => 0, mRNA2)
degr3: (mRNA3 => 0, mRNA3)
degr4: (P1 => 0, P1)
degr5: (P2 => 0, P2)
degr6: (P3 => 0, P3)
end "RepressilatorPkg"
set_observed_var!(repressilator, [:mRNA1, :mRNA2, :mRNA3, :P1, :P2, :P3])
set_x0!(repressilator, [:mRNA1, :mRNA2, :mRNA3], fill(0, 3))
set_x0!(repressilator, [:P1, :P2, :P3], [5, 0, 15])
set_param!(repressilator, :n, 2.0)
set_param!(repressilator, [:α, :α0, :β, :n], [400.0, 0.0, 2.0, 2.0])
set_time_bound!(repressilator, 200.0)