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Bentriou Mahmoud
MarkovProcesses.jl
Commits
3162fe33
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3162fe33
authored
4 years ago
by
Bentriou Mahmoud
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README.md
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...
@@ -6,23 +6,24 @@ A Julia package for efficient simulation, statistical inference and verification
...
@@ -6,23 +6,24 @@ A Julia package for efficient simulation, statistical inference and verification
It implements:
It implements:
*
A core of simulation for Markov Processes
*
A core of simulation for Markov Processes.
*
A simple interface for Biochemical Networks / Stochastic Petri Nets.
*
Synchronized simulation with Linear Hybrid Automata.
*
Synchronized simulation with Linear Hybrid Automata.
*
Approximate Bayesian Computation (a likelihood-free inference method)
*
Approximate Bayesian Computation (a likelihood-free inference method)
*
Automaton-ABC: a statistical method for verification of parametric CTMC (cite paper)
*
Automaton-ABC: a statistical method for verification of parametric CTMC (cite paper)
## Install
## Install
This package is not yet accessible via the Julia package manager. For install
atation
of the package:
This package is not yet accessible via the Julia package manager. For
the
install of the package:
1.
Clone this git repository on your computer.
1.
Clone this git repository on your computer.
2.
Add the "core" directory of this repository to your LOAD_PATH. This can be done by two different ways:
2.
Add the "core" directory of this repository to your
`
LOAD_PATH
`
. This can be done by two different ways:
*
Add the Julia line code
*
Add the Julia line code
```
julia
```
julia
import
Distributed
:
@everywhere
import
Distributed
:
@everywhere
@everywhere
push!
(
LOAD_PATH
,
/
path
/
to
/
markovprocesses
.
jl
/
core
")
`
@everywhere
push!
(
LOAD_PATH
,
/
path
/
to
/
markovprocesses
.
jl
/
core
")
```
```
on your Julia startup file which is often located in
`~/.julia/config/startup.jl`
in Unix systems.
on your Julia startup file which is often located in
`~/.julia/config/startup.jl`
in Unix systems.
*
If you don't want to add this in your startup file, you can add these lines in your Julia script before
`using MarkovProcesses`
.
*
If you don't want to add this in your startup file, you can add these lines in your Julia script before
`using MarkovProcesses`
.
...
@@ -30,7 +31,7 @@ on your Julia startup file which is often located in `~/.julia/config/startup.jl
...
@@ -30,7 +31,7 @@ on your Julia startup file which is often located in `~/.julia/config/startup.jl
A few notebooks are available in examples/notebooks for a quick presentation of the different features of the package.
A few notebooks are available in examples/notebooks for a quick presentation of the different features of the package.
## Test
## Test
s
Execution tests and statistical tests are available. It can be run by:
Execution tests and statistical tests are available. It can be run by:
...
@@ -40,7 +41,7 @@ Execution tests and statistical tests are available. It can be run by:
...
@@ -40,7 +41,7 @@ Execution tests and statistical tests are available. It can be run by:
## Benchmarks
## Benchmarks
Effort
s have been made
for efficient computation of simulations with 100% Julia code. These benchmark can be found in bench/.
Benchmark
s have been made
to test the performance of the package compared to well-known efficient other packages such as
`DifferentialEquations.jl`
.
## Info
## Info
...
...
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