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import numpy as np
from math import sqrt
class Individu():
self.score = None
def evaluate(self, brin):
traj = Traj3D()
traj.compute(brin + fisrt_nuc, self.table)
traj_array = np.array(traj.getTraj())
first_nuc_coordonate = traj_array[0, 0:3]
last_nuc_coordonate = traj_array[-2, 0:3]
test = np.linalg.norm(first_nuc_coordonate - last_nuc_coordonate, ord=2)
distance = sqrt(sum((first_nuc_coordonate - last_nuc_coordonate) ** 2))
diff_ideal_distance = abs(3.38 - distance)
diff_ideal_distance_2 = abs(3.38 - test)
self.score = (1/(diff_ideal_distance ), 1/diff_ideal_distance_2)
table = RotTable()
test = Individu(table)
test.evaluate("AAAGGATCTTCTTGAGATCCTTTTTTTCTGCGCGTAATCTGCTGCCAGTAAACGAAAAAACCGCCTGGGGAGGCGGTTTAGTCGAA")