algogenetique.py

import mathutils
import math
import numpy
import RotTable
from individu import Individu
from population import Population, afficher
import croisement
from Traj3D import *
from random import random
import matplotlib.pyplot as plt



def main(N,tmax,pmutation, proportion,brin="plasmid_8k.fasta"):
    '''lineList = [line.rstrip('\n') for line in open(brin)]
	brin = ''.join(lineList[1:])'''
    L=[]
    People=Population(N)
    for i in range(tmax):
        print(i)
        max=0
        best=None
        People.reproduction(p = proportion, proba_mutation= pmutation)
        for individu in People.indiv:
            if individu.score>max:
                best=individu
                max=individu.score
        L.append(max)

    plt.plot([i for i in range(tmax)], L)
    plt.show()
    return(best)


#main(100,100,0.01,50)

lineList = [line.rstrip('\n') for line in open("plasmid_8k.fasta")]
brin = ''.join(lineList[1:])
print(brin)