optimized the program(/2 the time)

algogenetique.py

@@ -26,7 +26,6 @@ def main(N,tmax,pmutation, proportion):
         S1.append(int(individu.score))
     maximum=int(max(S1))
     for i in range(tmax):
-        #print(i)
         mini=People.indiv[0].score
         best=People.indiv[0]
         People.reproduction(p = proportion, proba_mutation= pmutation)
@@ -35,6 +34,8 @@ def main(N,tmax,pmutation, proportion):
                 best=individu
                 mini=individu.score
         L.append(mini)
+        print(i,":",mini)
+
     plt.subplot(221)
     plt.plot([i for i in range(tmax)], L)
     
@@ -55,7 +56,7 @@ def main(N,tmax,pmutation, proportion):
 
 lineList = [line.rstrip('\n') for line in open("plasmid_8k.fasta")]
 brin = ''.join(lineList[1:])
-best,People = main(10,10,0.01,5)
+best,People = main(200,10,0.01,100)
 test = Traj3D()
 test.compute(brin, best.table)
 test.draw("first_plot")

individu.py

@@ -84,10 +84,10 @@ class Individu():
 # print(individu1.table.rot_table)
 # individu1.mutation()
 
-table = RotTable()
-test = Individu(table)
-test.evaluate("AAAGGATCTTCTTGAGATCCTTTTTTTCTGCGCGTAATCTGCTGCCAGTAAACGAAAAAACCGCCTGGGGAGGCGGTTTAGTCGAA")
-print(test.score)
+#table = RotTable()
+#test = Individu(table)
+#test.evaluate("AAAGGATCTTCTTGAGATCCTTTTTTTCTGCGCGTAATCTGCTGCCAGTAAACGAAAAAACCGCCTGGGGAGGCGGTTTAGTCGAA")
+#print(test.score)
 
 
 # qqun=Individu(RotTable())

population.py

-
 from random import *
 from individu import Individu
 from RotTable import RotTable
@@ -14,9 +13,6 @@ class Population:
         """Fonction qui renvoie une nouvelle instance de population a partir d'une liste d'individus"""
         self.n = len(liste_individus)
         self.indiv = liste_individus
-        for i in range(0,self.n):
-            self.indiv[i].evaluate()
-
         return self
 
     def selection_p_best(self,p=None):
@@ -83,7 +79,7 @@ class Population:
             
             x=self.indiv[m]
             y=self.indiv[t]
-            if x.score<=y.score:
+            if x.score<y.score:
                 newself.append(x)
             else:
                 newself.append(y)
@@ -207,5 +203,6 @@ def test():
 
 
 
+