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Bentriou Mahmoud
MarkovProcesses.jl
Commits
dbaccafa
Commit
dbaccafa
authored
Feb 15, 2021
by
Bentriou Mahmoud
Browse files
changes in repressilator: transition name + degradation reactions; change in plots
parent
f589101f
Changes
2
Hide whitespace changes
Inline
Side-by-side
core/plots.jl
View file @
dbaccafa
...
...
@@ -126,8 +126,6 @@ function plot_periodic_trajectory(A::LHA, σ::SynchronizedTrajectory, sym_obs::S
scatter!
(
p
,
times
(
σ
)[
idx_n
],
σ
[
sym_obs
][
idx_n
],
annotations
=
annots
,
markershape
=
:
utriangle
,
markersize
=
3
,
label
=
"n"
)
hline!
(
p
,
[
A
.
constants
[
:
L
],
A
.
constants
[
:
H
]],
label
=
"L, H"
,
color
=
:
grey
;
linestyle
=
:
dot
)
@show
values_n
@show
values_tp
if
filename
==
""
display
(
p
)
else
...
...
models/repressilator.jl
View file @
dbaccafa
...
...
@@ -6,12 +6,12 @@ repressilator = @network_model begin
trl1
:
(
mRNA1
=>
mRNA1
+
P1
,
β
*
mRNA1
)
trl2
:
(
mRNA2
=>
mRNA2
+
P2
,
β
*
mRNA2
)
trl3
:
(
mRNA3
=>
mRNA3
+
P3
,
β
*
mRNA3
)
d1
:
(
mRNA1
=>
0
,
mRNA1
)
d2
:
(
mRNA2
=>
0
,
mRNA2
)
d3
:
(
mRNA3
=>
0
,
mRNA3
)
d4
:
(
P1
=>
0
,
P1
)
d5
:
(
P2
=>
0
,
P2
)
d6
:
(
P3
=>
0
,
P3
)
d
egr
1
:
(
mRNA1
=>
0
,
mRNA1
)
d
egr
2
:
(
mRNA2
=>
0
,
mRNA2
)
d
egr
3
:
(
mRNA3
=>
0
,
mRNA3
)
d
egr
4
:
(
P1
=>
0
,
P1
)
d
egr
5
:
(
P2
=>
0
,
P2
)
d
egr
6
:
(
P3
=>
0
,
P3
)
end
"Repressilator pkg"
set_observed_var!
(
repressilator
,
[
:
mRNA1
,
:
mRNA2
,
:
mRNA3
,
:
P1
,
:
P2
,
:
P3
])
...
...
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