- Nov 18, 2020
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Bentriou Mahmoud authored
Fix of a major issue in the simulation: sometimes the number of states wasn't consistent. Add of test to check the consistency of the Trajectory structure (unit/check_trajectory_consistency).
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- Nov 17, 2020
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Bentriou Mahmoud authored
Implementation of the lp distance for trajectories. Add of unit tests for lp distance.
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Bentriou Mahmoud authored
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Bentriou Mahmoud authored
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Bentriou Mahmoud authored
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Bentriou Mahmoud authored
can be set by the user. Changes of SIR and ER.
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Bentriou Mahmoud authored
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- Nov 16, 2020
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Bentriou Mahmoud authored
previously loaded model). The package warns when this happen. Several benchmarks for the data structure. Now we chose the row buffer method according to results (mainly because the trajectory access with far way faster, but strangly not that much differences in other cases).
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Bentriou Mahmoud authored
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Bentriou Mahmoud authored
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Bentriou Mahmoud authored
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Bentriou Mahmoud authored
- a script to run the different categories - now the execution of simulation/ scripts is checked - several minor changes and add of tests New directory : models/_bench_perf_tests. Models for performance benchmarking purposes.
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Bentriou Mahmoud authored
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Bentriou Mahmoud authored
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- Nov 15, 2020
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Bentriou Mahmoud authored
In fine I give the Abstract and Static arrays types up.
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Bentriou Mahmoud authored
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Bentriou Mahmoud authored
- Real => Float64 for better performance (Real is an abstract type) - Should not create a type inside the model because the compiler fails at estimating the type of the output of the f function (detected with @code_warntype) - Intentionaly ER is not as well improved as SIR in order to check the differences of performance.
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Bentriou Mahmoud authored
- Add of benchmark scripts that compares perf wrt pygmalion. => As expected it is bad in terms of reading cost (because of row by row matrix read) but it is also not good in terms of simulation cost. hcat seems to perform badly, should investigate.
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Bentriou Mahmoud authored
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Bentriou Mahmoud authored
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Bentriou Mahmoud authored
Files should have the same name as the exported model variable (<:Model)
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Bentriou Mahmoud authored
SIR model. - Evolution of the ContinuousTimeModel type - simulate, easy access to Trajectory fields - fix of several errors
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- Nov 14, 2020
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Bentriou Mahmoud authored
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Bentriou Mahmoud authored
run the tests Function load_module in core + test
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Bentriou Mahmoud authored
Two folders: - core/ which contains the essential files for the packages - tests/ which contains tests and benchmarks of other packages / methods For now on: - we wrote minimal tests in tests/ (a simulation of SIR model) that should run for a first minimal version of the package - we described in core/ the general structure of essential types, how they articulate each others and the minimum methods we should implement for a first version that runs the tests.
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Bentriou Mahmoud authored
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