Commits · c809fe7efec967783960e681b0569ee169bca24d · Bentriou Mahmoud / MarkovProcesses.jl · GitLab

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Feb 15, 2021
- changes in repressilator: transition name + degradation reactions; change in plots · dbaccafa
  Bentriou Mahmoud authored 4 years ago
  
  dbaccafa
Feb 13, 2021
- modify names of repressilator + small fix in plots of oscillatory trajectories · a1786dc0
  Bentriou Mahmoud authored 4 years ago
  
  a1786dc0
Feb 12, 2021
- fix in sir tauleap model · ec105c9a
  Bentriou Mahmoud authored 4 years ago
  
  ec105c9a
Feb 08, 2021
- new model intracellular viral infection + smc_chernoff · 9e57c693
  Bentriou Mahmoud authored 4 years ago
  
  9e57c693
Feb 07, 2021
- Several fixs: · 40cf91a4
  Bentriou Mahmoud authored 4 years ago
  40cf91a4
Jan 25, 2021
- Forgot the two oscillatory models · 87403ace
  Bentriou Mahmoud authored 4 years ago
  
  87403ace
Jan 16, 2021
- now the package has a better structure for distributed simulations by better... · 9028ff5d
  Bentriou Mahmoud authored 4 years ago
  9028ff5d
Dec 22, 2020
- new model: square wave oscillator · 9bdf9e9d
  Bentriou Mahmoud authored 4 years ago
  
  9bdf9e9d
Dec 11, 2020
- change of model names · bae6e938
  Bentriou Mahmoud authored 4 years ago
  
  bae6e938
Dec 10, 2020
- Fix about types of transition arrays · 80eb2e36
  Bentriou Mahmoud authored 4 years ago
  
  80eb2e36
Dec 09, 2020
- Variables, parameters and transitions of models are now represented as · 8fa83b7f
  Bentriou Mahmoud authored 4 years ago
  8fa83b7f
Dec 05, 2020
- add of @inbounds macro for perf · 2e2b5c9c
  Bentriou Mahmoud authored 4 years ago
  
  2e2b5c9c
- Implementation of the possibility of naming a model · e6944e0b
  Bentriou Mahmoud authored 4 years ago
  
  e6944e0b
- Modification of sir_tauleap for new simulate functions + add of · 70407040
  Bentriou Mahmoud authored 4 years ago
  70407040
- Improved performance of simulate methods: elimination of the unecessary · 169c93d2
  Bentriou Mahmoud authored 4 years ago
  169c93d2
- Implementation of the macro @biochemical_network. It gives an easy way · b4521042
  Bentriou Mahmoud authored 4 years ago
  b4521042
Dec 03, 2020
- add tests and fix warning tests + poisson process · 9190a75c
  Bentriou Mahmoud authored 4 years ago
  
  9190a75c
- SIR tauleap · 89a448ff
  Bentriou Mahmoud authored 4 years ago
  
  89a448ff
Nov 25, 2020
- Improvement of the simulation core, less memory allocated. · 146e2afa
  Bentriou Mahmoud authored 4 years ago
  
  146e2afa
Nov 24, 2020
- Try to optimize the allocation by rewriting simulate function. There's a · 618d7910
  Bentriou Mahmoud authored 4 years ago
  618d7910
- Change of the simulate function with resize!. Gain of performance is · 35ac8882
  Bentriou Mahmoud authored 4 years ago
  35ac8882
Nov 22, 2020
- Add of a function in models that creates new model objects + tests. · 2a9d3b72
  Bentriou Mahmoud authored 4 years ago
  2a9d3b72
Nov 21, 2020
- Rename of functions is_X => isX because of Julia Base name functions. · 8041f629
  Bentriou Mahmoud authored 4 years ago
  8041f629
- Forgot the file core/utils.jl in previous commit · 44feda9e
  Bentriou Mahmoud authored 4 years ago
  44feda9e
Nov 19, 2020
- Change of different names as the Continuous Time model object. · cefe75b7
  Bentriou Mahmoud authored 4 years ago
  cefe75b7
Nov 18, 2020
- Fix of several type unstabilities due to @view macro. · 8020a182
  Bentriou Mahmoud authored 4 years ago
  8020a182
Nov 17, 2020
- Now the data structure is: add belong the rows with a buffer system that · f95d6529
  Bentriou Mahmoud authored 4 years ago
  f95d6529
- Benchmark for ER models. Reorganization of benchmarks. Tests. · 46af850b
  Bentriou Mahmoud authored 4 years ago
  
  46af850b
Nov 16, 2020
- Fix the redefinition of the f! function of models (side effect of · 7aa17e74
  Bentriou Mahmoud authored 4 years ago
  7aa17e74
- Reorganisation of the tests directory: · c2159b6c
  Bentriou Mahmoud authored 4 years ago
  c2159b6c
- Same changes for ER model · bf7e270e
  Bentriou Mahmoud authored 4 years ago
  
  bf7e270e
Nov 15, 2020
- Improvement of memory allocation. · d690d6b9
  Bentriou Mahmoud authored 4 years ago
  d690d6b9
- Type stability for ER · f079f166
  Bentriou Mahmoud authored 4 years ago
  
  f079f166
- Fix of type instability in SIR model: · 384b4ad7
  Bentriou Mahmoud authored 4 years ago
  384b4ad7
- - Add of ER model + tests · 06dca928
  Bentriou Mahmoud authored 4 years ago
  06dca928
- Change of model filename SIR. · e3b4f830
  Bentriou Mahmoud authored 4 years ago
  e3b4f830
- Commit that implement the essentials for the lauch of a simulation of a · 2f7fea8f
  Bentriou Mahmoud authored 4 years ago
  2f7fea8f
Nov 14, 2020
- Test reorganization : grouping tests by type (unit, sim) + script that · a20f637f
  Bentriou Mahmoud authored 4 years ago
  a20f637f