check_constraints and update_state! functions of an Edge in order to
improve performance.
Acutally the gain is low, but it improved the readabilty of the code.
All tests passed.

integrated poisson model wasn't updated
improvement of plots
fix of synchronized simulation when state is absorbing
All tests passed

All automata were readapted and are in accordance with the last description of the thesis. Tests passed

check_constraint and update_state functions are created inside
create_automaton_*(), by the evaluation of meta_elementary_functions <:
Expr. check_constraint and update_state don't depend on constants::Dict
anymore: constants are interpolated inside the expression.

Add of tests for euclidean distance automaton.
Add a new function euclidean_distance that computes the euclidean
distance of a Trajectory compared to observations along a discrete
timeline.

- A_per (period_automaton) computes noisy period of an oscillatory model
- A_eucl (euclidean_distance) computes euclidean distance with regard to
data points of a trajectory.

1 script that plots oscillatory trajectory is added

automata and proba moels are differents. This bug was introduced after
we change the structure of automata in order to better distributed
programming.
It leads to a restructuration of automata. In fine, the structure is
more stable and consistent. It is possible it is more computationally
efficient, but for now it is not well tested.

2) Creation of functions that collects data along with a timeline
over a trajectory + unit test vectorize.

3) Very small fix in plots and abc smc.